rs8269683 SNP Detail

Summary

• ID
  rs8269683
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164675470 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CATTGTTCAC TTTTTTAATC
  TGTGGGCCTG AGGGTCGGGA GTGGTCAAAG TGCGTGGCCC TGAAGGTTAT TAGTCAGGGT
  GCCAGAGATC AGGTGATCTT GGTGTTGACA GAAGGGTTCC CCAGGCTCCT GGGGACCCCT
  TACTGGTGAC AAGCGAGAAA GCGGCGCTAG GACCCCCAGG CAGAGCTGGG GGAAGTTAGA
  S
  AAGGGGGAAA TGCCTTACAT GGTTCATCCA CCCCGCCCCC GCGGTCACAA TCTGAGCCCG
  CTGCCCAAAA TAGCCCTTGG CATGAGCTGC CCTGTTGCAC GGCTTGGAGA TGGCTGCTCC
  CTCCGAACAC GTAGGACTGG GTGGCCCACG GAGCCCTGCG CGCCCAGAGC CCCCTCCCAC
  CCGCTTCCAC CAAGTGCATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12766834	Ppgb_JC7730_5	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8269683					SNP	G	G	G	G	G	G	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164675470 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12674	CpG island 12674			within coordinates
Ctsa	cathepsin A			Intron
				Noncoding-Transcript-Variant
Neurl2	neuralized E3 ubiquitin protein ligase 2			mRNA-UTR
Rr367364	regulatory region 367364			212 bp upstream
Rr569728	regulatory region 569728			1301 bp distal
Rr569729	regulatory region 569729			639 bp distal
Rr569730	regulatory region 569730			within coordinates
Tssr21656	transcription start site region 21656			672 bp downstream
Tssr21657	transcription start site region 21657			615 bp downstream
Tssr21658	transcription start site region 21658			580 bp downstream
Tssr21659	transcription start site region 21659			216 bp upstream
Tssr21660	transcription start site region 21660			231 bp upstream
Tssr21661	transcription start site region 21661			291 bp upstream
Tssr21662	transcription start site region 21662			465 bp upstream
Tssr21663	transcription start site region 21663			526 bp upstream
Tssr21664	transcription start site region 21664			557 bp upstream
Tssr21665	transcription start site region 21665			1313 bp upstream
Tssr21666	transcription start site region 21666			1624 bp upstream
Tssr21667	transcription start site region 21667			1677 bp upstream
Tssr27546	transcription start site region 27546			70 bp upstream