rs8269683 SNP Detail

Summary

• ID
  rs8269683
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164675470 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CATTGTTCAC TTTTTTAATC
  TGTGGGCCTG AGGGTCGGGA GTGGTCAAAG TGCGTGGCCC TGAAGGTTAT TAGTCAGGGT
  GCCAGAGATC AGGTGATCTT GGTGTTGACA GAAGGGTTCC CCAGGCTCCT GGGGACCCCT
  TACTGGTGAC AAGCGAGAAA GCGGCGCTAG GACCCCCAGG CAGAGCTGGG GGAAGTTAGA
  S
  AAGGGGGAAA TGCCTTACAT GGTTCATCCA CCCCGCCCCC GCGGTCACAA TCTGAGCCCG
  CTGCCCAAAA TAGCCCTTGG CATGAGCTGC CCTGTTGCAC GGCTTGGAGA TGGCTGCTCC
  CTCCGAACAC GTAGGACTGG GTGGCCCACG GAGCCCTGCG CGCCCAGAGC CCCCTCCCAC
  CCGCTTCCAC CAAGTGCATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12766834	Ppgb_JC7730_5	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8269683					SNP	G	G	G	G	G	G	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164675470 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12674	CpG island 12674	within coordinates
Ctsa	cathepsin A	within coordinates
Neurl2	neuralized E3 ubiquitin protein ligase 2	94 bp upstream
Rr367364	regulatory region 367364	212 bp upstream
Tssr21656	transcription start site region 21656	672 bp downstream
Tssr21657	transcription start site region 21657	615 bp downstream
Tssr21658	transcription start site region 21658	580 bp downstream
Tssr21659	transcription start site region 21659	216 bp upstream
Tssr21660	transcription start site region 21660	231 bp upstream
Tssr21661	transcription start site region 21661	291 bp upstream
Tssr21662	transcription start site region 21662	465 bp upstream
Tssr21663	transcription start site region 21663	526 bp upstream
Tssr21664	transcription start site region 21664	557 bp upstream
Tssr21665	transcription start site region 21665	1313 bp upstream
Tssr21666	transcription start site region 21666	1624 bp upstream
Tssr21667	transcription start site region 21667	1677 bp upstream
Tssr27546	transcription start site region 27546	70 bp upstream