rs8269685 SNP Detail

Summary

• ID
  rs8269685
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164675383 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGCCC AAAATAGCCC TTGGCATGAG
  Y
  TGCCCTGTTG CACGGCTTGG AGATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12766836	Ppgb_JC7730_7	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8269685					SNP	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164675383 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12674	CpG island 12674	within coordinates
Ctsa	cathepsin A	within coordinates
Neurl2	neuralized E3 ubiquitin protein ligase 2	7 bp upstream
Rr367364	regulatory region 367364	299 bp upstream
Rr397479	regulatory region 397479	1960 bp downstream
Tssr21656	transcription start site region 21656	585 bp downstream
Tssr21657	transcription start site region 21657	528 bp downstream
Tssr21658	transcription start site region 21658	493 bp downstream
Tssr21659	transcription start site region 21659	303 bp upstream
Tssr21660	transcription start site region 21660	318 bp upstream
Tssr21661	transcription start site region 21661	378 bp upstream
Tssr21662	transcription start site region 21662	552 bp upstream
Tssr21663	transcription start site region 21663	613 bp upstream
Tssr21664	transcription start site region 21664	644 bp upstream
Tssr21665	transcription start site region 21665	1400 bp upstream
Tssr21666	transcription start site region 21666	1711 bp upstream
Tssr21667	transcription start site region 21667	1764 bp upstream
Tssr27546	transcription start site region 27546	within coordinates