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rs8269687 SNP Detail
Summary
  • ID
    rs8269687
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr2:164675326 (GRCm39)
  • SNP Orientation to the Genome
    reverse
  • SNP Reference Flanking Sequence
                                                GGTGACAAGC GAGAAAGCGG
    CGCTAGGACC CCCAGGCAGA GCTGGGGGAA GTTAGAGAAG GGGGAAATGC CTTACATGGT
    TCATCCACCC CGCCCCCGCG GTCACAATCT GAGCCCGCTG CCCAAAATAG CCCTTGGCAT
    GAGCTGCCCT GTTGCACGGC TTGGAGATGG CTGCTCCCTC CGAACACGTA GGACTGGGTG
    S
    CCCACGGAGC CCTGCGCGCC CAGAGCCCCC TCCCACCCGC TTCCACCAAG TGCATGGAGC
    CAACATCCGC ATGGACCCCT CAGGAACGCG AGCCACACGC GTGGAGAGTT TCGCCCACGG
    TGTGTGCTTC AGTCGTGAGC CCCTGGCCCC CGGCCAGGTA TTTCTAGTGG AAATTGAGGA
    AAAAGAGCTG GGCTGGTGCG                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129/Sv
129X1/SvJ
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2 H2-T18/oSnJ
BALB/cByJ
BALB/cJ
DBA/2J
MRL/MpJ
NZW/Lac
SPRET/EiJ
ss12766838 Ppgb_JC7730_9 ROCHEBIO RPAMM f SNP C G G G G G G G G G
ss45327882 mCV23739729 ABI CRAMUS_MOUSE r SNP G C C
ss148232117 ENSMUSSNP5205376 ENSEMBL ENSEMBL_Sanger r SNP G C C
SNP Consensus Information
SNP Consensus Type
129/Sv
129X1/SvJ
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2 H2-T18/oSnJ
BALB/cByJ
BALB/cJ
DBA/2J
MRL/MpJ
NZW/Lac
SPRET/EiJ
rs8269687 SNP C C G G G G G G G G G G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:164675326 () rs orientation: reverse
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi12674 CpG island 12674 within coordinates
Ctsa cathepsin A within coordinates
Neurl2 neuralized E3 ubiquitin protein ligase 2 within coordinates
Rr367364 regulatory region 367364 356 bp upstream
Rr397479 regulatory region 397479 1903 bp downstream
Rr569728 regulatory region 569728 1157 bp distal
Rr569729 regulatory region 569729 495 bp distal
Rr569730 regulatory region 569730 40 bp proximal
Tssr21656 transcription start site region 21656 528 bp downstream
Tssr21657 transcription start site region 21657 471 bp downstream
Tssr21658 transcription start site region 21658 436 bp downstream
Tssr21659 transcription start site region 21659 360 bp upstream
Tssr21660 transcription start site region 21660 375 bp upstream
Tssr21661 transcription start site region 21661 435 bp upstream
Tssr21662 transcription start site region 21662 609 bp upstream
Tssr21663 transcription start site region 21663 670 bp upstream
Tssr21664 transcription start site region 21664 701 bp upstream
Tssr21665 transcription start site region 21665 1457 bp upstream
Tssr21666 transcription start site region 21666 1768 bp upstream
Tssr21667 transcription start site region 21667 1821 bp upstream
Tssr27546 transcription start site region 27546 32 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory