GGTGACAAGC GAGAAAGCGG CGCTAGGACC CCCAGGCAGA GCTGGGGGAA GTTAGAGAAG GGGGAAATGC CTTACATGGT TCATCCACCC CGCCCCCGCG GTCACAATCT GAGCCCGCTG CCCAAAATAG CCCTTGGCAT GAGCTGCCCT GTTGCACGGC TTGGAGATGG CTGCTCCCTC CGAACACGTA GGACTGGGTG S CCCACGGAGC CCTGCGCGCC CAGAGCCCCC TCCCACCCGC TTCCACCAAG TGCATGGAGC CAACATCCGC ATGGACCCCT CAGGAACGCG AGCCACACGC GTGGAGAGTT TCGCCCACGG TGTGTGCTTC AGTCGTGAGC CCCTGGCCCC CGGCCAGGTA TTTCTAGTGG AAATTGAGGA AAAAGAGCTG GGCTGGTGCG S = C/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129/Sv |
129X1/SvJ |
A/HeJ |
A/J |
AKR/J |
B10.D2-Hc<0> H2 |
BALB/cByJ |
BALB/cJ |
DBA/2J |
MRL/MpJ |
NZW/Lac |
SPRET/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss12766838 | Ppgb_JC7730_9 | ROCHEBIO | RPAMM | f | SNP | C | G | G | G | G | G | G | G | G | G | ||
ss45327882 | mCV23739729 | ABI | CRAMUS_MOUSE | r | SNP | G | C | C | |||||||||
ss148232117 | ENSMUSSNP5205376 | ENSEMBL | ENSEMBL_Sanger | r | SNP | G | C | C | |||||||||
SNP Consensus Information | |||||||||||||||||
SNP | Consensus Type | 129/Sv |
129X1/SvJ |
A/HeJ |
A/J |
AKR/J |
B10.D2-Hc<0> H2 |
BALB/cByJ |
BALB/cJ |
DBA/2J |
MRL/MpJ |
NZW/Lac |
SPRET/EiJ |
||||
rs8269687 | SNP | C | C | G | G | G | G | G | G | G | G | G | G |
Location: Chr2:164675326 () rs orientation: reverse | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi12674 | CpG island 12674 | within coordinates | ||||||
Ctsa | cathepsin A | within coordinates | ||||||
Neurl2 | neuralized E3 ubiquitin protein ligase 2 | within coordinates | ||||||
Rr367364 | regulatory region 367364 | 356 bp upstream | ||||||
Rr397479 | regulatory region 397479 | 1903 bp downstream | ||||||
Rr569728 | regulatory region 569728 | 1157 bp distal | ||||||
Rr569729 | regulatory region 569729 | 495 bp distal | ||||||
Rr569730 | regulatory region 569730 | 40 bp proximal | ||||||
Tssr21656 | transcription start site region 21656 | 528 bp downstream | ||||||
Tssr21657 | transcription start site region 21657 | 471 bp downstream | ||||||
Tssr21658 | transcription start site region 21658 | 436 bp downstream | ||||||
Tssr21659 | transcription start site region 21659 | 360 bp upstream | ||||||
Tssr21660 | transcription start site region 21660 | 375 bp upstream | ||||||
Tssr21661 | transcription start site region 21661 | 435 bp upstream | ||||||
Tssr21662 | transcription start site region 21662 | 609 bp upstream | ||||||
Tssr21663 | transcription start site region 21663 | 670 bp upstream | ||||||
Tssr21664 | transcription start site region 21664 | 701 bp upstream | ||||||
Tssr21665 | transcription start site region 21665 | 1457 bp upstream | ||||||
Tssr21666 | transcription start site region 21666 | 1768 bp upstream | ||||||
Tssr21667 | transcription start site region 21667 | 1821 bp upstream | ||||||
Tssr27546 | transcription start site region 27546 | 32 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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