rs8269687 SNP Detail

Summary

• ID
  rs8269687
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164675326 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GGTGACAAGC GAGAAAGCGG
  CGCTAGGACC CCCAGGCAGA GCTGGGGGAA GTTAGAGAAG GGGGAAATGC CTTACATGGT
  TCATCCACCC CGCCCCCGCG GTCACAATCT GAGCCCGCTG CCCAAAATAG CCCTTGGCAT
  GAGCTGCCCT GTTGCACGGC TTGGAGATGG CTGCTCCCTC CGAACACGTA GGACTGGGTG
  S
  CCCACGGAGC CCTGCGCGCC CAGAGCCCCC TCCCACCCGC TTCCACCAAG TGCATGGAGC
  CAACATCCGC ATGGACCCCT CAGGAACGCG AGCCACACGC GTGGAGAGTT TCGCCCACGG
  TGTGTGCTTC AGTCGTGAGC CCCTGGCCCC CGGCCAGGTA TTTCTAGTGG AAATTGAGGA
  AAAAGAGCTG GGCTGGTGCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12766838	Ppgb_JC7730_9	ROCHEBIO	RPAMM	f	SNP	C		G	G	G	G	G	G		G	G	G
ss45327882	mCV23739729	ABI	CRAMUS_MOUSE	r	SNP		G		C					C
ss148232117	ENSMUSSNP5205376	ENSEMBL	ENSEMBL_Sanger	r	SNP		G		C					C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8269687					SNP	C	C	G	G	G	G	G	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164675326 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12674	CpG island 12674			within coordinates
Ctsa	cathepsin A			Intron
				Noncoding-Transcript-Variant
Neurl2	neuralized E3 ubiquitin protein ligase 2			Coding-NonSynonymous
Rr367364	regulatory region 367364			356 bp upstream
Rr397479	regulatory region 397479			1903 bp downstream
Rr569728	regulatory region 569728			1157 bp distal
Rr569729	regulatory region 569729			495 bp distal
Rr569730	regulatory region 569730			40 bp proximal
Tssr21656	transcription start site region 21656			528 bp downstream
Tssr21657	transcription start site region 21657			471 bp downstream
Tssr21658	transcription start site region 21658			436 bp downstream
Tssr21659	transcription start site region 21659			360 bp upstream
Tssr21660	transcription start site region 21660			375 bp upstream
Tssr21661	transcription start site region 21661			435 bp upstream
Tssr21662	transcription start site region 21662			609 bp upstream
Tssr21663	transcription start site region 21663			670 bp upstream
Tssr21664	transcription start site region 21664			701 bp upstream
Tssr21665	transcription start site region 21665			1457 bp upstream
Tssr21666	transcription start site region 21666			1768 bp upstream
Tssr21667	transcription start site region 21667			1821 bp upstream
Tssr27546	transcription start site region 27546			32 bp downstream