rs8269688 SNP Detail

Summary

• ID
  rs8269688
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164676258 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCACC ACGGGGCTGT TCTTTGGGTC
  R
  TTCTGCGACT CCACAAACCT GGGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cJ	LG/J	LP/J	MRL/MpJ	NZW/Lac	SM/J	SPRET/EiJ
ss12766839	Ppgb_JC7731_1	ROCHEBIO	RPAMM	f	SNP	G	G			G			G	G		A
ss12766848	Ppgb_JC7732_6	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G				G		A
ss24736270	Ppgb_JC7732_7	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G		G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cJ	LG/J	LP/J	MRL/MpJ	NZW/Lac	SM/J	SPRET/EiJ
rs8269688					SNP	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164676258 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12674	CpG island 12674	within coordinates
Ctsa	cathepsin A	within coordinates
Neurl2	neuralized E3 ubiquitin protein ligase 2	882 bp upstream
Rr367364	regulatory region 367364	467 bp downstream
Rr569729	regulatory region 569729	1427 bp distal
Rr569730	regulatory region 569730	392 bp distal
Tssr21656	transcription start site region 21656	1460 bp downstream
Tssr21657	transcription start site region 21657	1403 bp downstream
Tssr21658	transcription start site region 21658	1368 bp downstream
Tssr21659	transcription start site region 21659	563 bp downstream
Tssr21660	transcription start site region 21660	526 bp downstream
Tssr21661	transcription start site region 21661	486 bp downstream
Tssr21662	transcription start site region 21662	290 bp downstream
Tssr21663	transcription start site region 21663	241 bp downstream
Tssr21664	transcription start site region 21664	200 bp downstream
Tssr21665	transcription start site region 21665	525 bp upstream
Tssr21666	transcription start site region 21666	836 bp upstream
Tssr21667	transcription start site region 21667	889 bp upstream
Tssr21668	transcription start site region 21668	1291 bp upstream
Tssr21669	transcription start site region 21669	1343 bp upstream
Tssr27546	transcription start site region 27546	858 bp upstream