rs8269689 SNP Detail

Summary

• ID
  rs8269689
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164676177 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCTGC CTGGGGTCGT TAGAATTCGC
  Y
  CGTCCAGTTA TCATGCCCTC CTAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/Lac	NZW/LacJ	SM/J	SPRET/EiJ	WSB/EiJ
ss12766840	Ppgb_JC7731_2	ROCHEBIO	RPAMM	f	SNP	T			C				C						C		C			C
ss37516089	NES08883267	PERLEGEN	MM_PANEL2	r	SNP		A			G	G	G		G	G	G		A		G		G			G
ss148232121	ENSMUSSNP6096571	ENSEMBL	ENSEMBL_Sanger	r	SNP			A								G
ss320606929	CHEV_2_164659757	CHEVERUD	SCREENING_POP	r	SNP												G						G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/Lac	NZW/LacJ	SM/J	SPRET/EiJ	WSB/EiJ
rs8269689					SNP	T	T	T	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516089	NES08883267	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164676177 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12674	CpG island 12674	within coordinates
Ctsa	cathepsin A	within coordinates
Neurl2	neuralized E3 ubiquitin protein ligase 2	801 bp upstream
Rr367364	regulatory region 367364	386 bp downstream
Tssr21656	transcription start site region 21656	1379 bp downstream
Tssr21657	transcription start site region 21657	1322 bp downstream
Tssr21658	transcription start site region 21658	1287 bp downstream
Tssr21659	transcription start site region 21659	482 bp downstream
Tssr21660	transcription start site region 21660	445 bp downstream
Tssr21661	transcription start site region 21661	405 bp downstream
Tssr21662	transcription start site region 21662	209 bp downstream
Tssr21663	transcription start site region 21663	160 bp downstream
Tssr21664	transcription start site region 21664	119 bp downstream
Tssr21665	transcription start site region 21665	606 bp upstream
Tssr21666	transcription start site region 21666	917 bp upstream
Tssr21667	transcription start site region 21667	970 bp upstream
Tssr21668	transcription start site region 21668	1372 bp upstream
Tssr21669	transcription start site region 21669	1424 bp upstream
Tssr27546	transcription start site region 27546	777 bp upstream