rs8269690 SNP Detail

Summary

• ID
  rs8269690
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164676006 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCTGG TCCGGAGCTG CTTCGTTCCG
  R
  GACGCCCAGG ACAGGAGCAG CAACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12766841	Ppgb_JC7731_3	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8269690					SNP	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164676006 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12674	CpG island 12674	within coordinates
Ctsa	cathepsin A	within coordinates
Neurl2	neuralized E3 ubiquitin protein ligase 2	630 bp upstream
Rr367364	regulatory region 367364	215 bp downstream
Tssr21656	transcription start site region 21656	1208 bp downstream
Tssr21657	transcription start site region 21657	1151 bp downstream
Tssr21658	transcription start site region 21658	1116 bp downstream
Tssr21659	transcription start site region 21659	311 bp downstream
Tssr21660	transcription start site region 21660	274 bp downstream
Tssr21661	transcription start site region 21661	234 bp downstream
Tssr21662	transcription start site region 21662	38 bp downstream
Tssr21663	transcription start site region 21663	within coordinates
Tssr21664	transcription start site region 21664	21 bp upstream
Tssr21665	transcription start site region 21665	777 bp upstream
Tssr21666	transcription start site region 21666	1088 bp upstream
Tssr21667	transcription start site region 21667	1141 bp upstream
Tssr21668	transcription start site region 21668	1543 bp upstream
Tssr21669	transcription start site region 21669	1595 bp upstream
Tssr27546	transcription start site region 27546	606 bp upstream