GCAGT TCCTGGGGAG ACGATGGCGC R CATCTCCGGG AGAAGCCCCC GCTCG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129/Sv |
MRL/MpJ |
SPRET/EiJ |
---|---|---|---|---|---|---|---|---|
ss12766842 | Ppgb_JC7731_4 | ROCHEBIO | RPAMM | f | SNP | A | A | G |
SNP Consensus Information | ||||||||
SNP | Consensus Type | 129/Sv |
MRL/MpJ |
SPRET/EiJ |
||||
rs8269691 | SNP | A | A | G |
Location: Chr2:164675855 () rs orientation: reverse | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi12674 | CpG island 12674 | within coordinates | ||||||
Ctsa | cathepsin A | within coordinates | ||||||
Neurl2 | neuralized E3 ubiquitin protein ligase 2 | 479 bp upstream | ||||||
Rr367364 | regulatory region 367364 | 64 bp downstream | ||||||
Rr569728 | regulatory region 569728 | 1686 bp distal | ||||||
Rr569729 | regulatory region 569729 | 1024 bp distal | ||||||
Rr569730 | regulatory region 569730 | within coordinates | ||||||
Tssr21656 | transcription start site region 21656 | 1057 bp downstream | ||||||
Tssr21657 | transcription start site region 21657 | 1000 bp downstream | ||||||
Tssr21658 | transcription start site region 21658 | 965 bp downstream | ||||||
Tssr21659 | transcription start site region 21659 | 160 bp downstream | ||||||
Tssr21660 | transcription start site region 21660 | 123 bp downstream | ||||||
Tssr21661 | transcription start site region 21661 | 83 bp downstream | ||||||
Tssr21662 | transcription start site region 21662 | 80 bp upstream | ||||||
Tssr21663 | transcription start site region 21663 | 141 bp upstream | ||||||
Tssr21664 | transcription start site region 21664 | 172 bp upstream | ||||||
Tssr21665 | transcription start site region 21665 | 928 bp upstream | ||||||
Tssr21666 | transcription start site region 21666 | 1239 bp upstream | ||||||
Tssr21667 | transcription start site region 21667 | 1292 bp upstream | ||||||
Tssr21668 | transcription start site region 21668 | 1694 bp upstream | ||||||
Tssr21669 | transcription start site region 21669 | 1746 bp upstream | ||||||
Tssr27546 | transcription start site region 27546 | 455 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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