rs8269692 SNP Detail

Summary

• ID
  rs8269692
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164676511 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              AAGTACCCAG ACATCCCTAA
  GAGACCCACA GCTCCAGGAG TACCAGGTTC CAAGCATAGG GGTTGTACTC CAGGGTGACA
  CCATCTGGCT GGATCTGGGG AGGAAAGACA GAGAGGCCTG TGAGGGTGCC GGTTAGCAGC
  TGGGTGGAGA GAAAGAGCCA CAGTGCGTTT CCGTATTCTC ACACTCCATG AGAGGTACGG
  W
  AAGTTAGGGC AAGGGCCACC ACATAAAACA GAATTGTTAA GGAAAGCAAA CTTAGGCCAC
  AGGTTCCTTC TCCCCTTCCC CTTCCTGCCT TTTCCTTGAG CTGTCTCTAA CTAGTCTCCT
  GCCCTCTCTC ATGGGGGAGG GGGATAGTGG TCAACTCACC AGAAAGGGGC CGTGCTCTGT
  AAGCAGCCCA TCGAGCGAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12766844	Ppgb_JC7732_2	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8269692					SNP	A	A	A	A	A	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164676511 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12674	CpG island 12674	174 bp distal
Ctsa	cathepsin A	within coordinates
Neurl2	neuralized E3 ubiquitin protein ligase 2	1135 bp upstream
Rr367364	regulatory region 367364	720 bp downstream
Tssr21656	transcription start site region 21656	1713 bp downstream
Tssr21657	transcription start site region 21657	1656 bp downstream
Tssr21658	transcription start site region 21658	1621 bp downstream
Tssr21659	transcription start site region 21659	816 bp downstream
Tssr21660	transcription start site region 21660	779 bp downstream
Tssr21661	transcription start site region 21661	739 bp downstream
Tssr21662	transcription start site region 21662	543 bp downstream
Tssr21663	transcription start site region 21663	494 bp downstream
Tssr21664	transcription start site region 21664	453 bp downstream
Tssr21665	transcription start site region 21665	272 bp upstream
Tssr21666	transcription start site region 21666	583 bp upstream
Tssr21667	transcription start site region 21667	636 bp upstream
Tssr21668	transcription start site region 21668	1038 bp upstream
Tssr21669	transcription start site region 21669	1090 bp upstream
Tssr21670	transcription start site region 21670	1820 bp upstream
Tssr27546	transcription start site region 27546	1111 bp upstream