rs8269697 SNP Detail

Summary

• ID
  rs8269697
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164677225 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TCAGG TAGCTGCCCT GCACCTGAAG
  R
  TTCATGCTAG GATCCTGCAT GACCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NOD/ShiLtJ	NZW/Lac	NZW/LacJ	SPRET/EiJ	WSB/EiJ
ss12766849	Ppgb_JC7733_1	ROCHEBIO	RPAMM	f	SNP	A		A	A	A	A	A	A					A		A		G
ss37516088	NES08883246	PERLEGEN	MM_PANEL2	r	SNP		T		T	T		T		T	T	C	T		T		T		T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NOD/ShiLtJ	NZW/Lac	NZW/LacJ	SPRET/EiJ	WSB/EiJ
rs8269697					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516088	NES08883246	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164677225 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12674	CpG island 12674	888 bp distal
Ctsa	cathepsin A	within coordinates
Neurl2	neuralized E3 ubiquitin protein ligase 2	1849 bp upstream
Rr367364	regulatory region 367364	1434 bp downstream
Tssr21659	transcription start site region 21659	1530 bp downstream
Tssr21660	transcription start site region 21660	1493 bp downstream
Tssr21661	transcription start site region 21661	1453 bp downstream
Tssr21662	transcription start site region 21662	1257 bp downstream
Tssr21663	transcription start site region 21663	1208 bp downstream
Tssr21664	transcription start site region 21664	1167 bp downstream
Tssr21665	transcription start site region 21665	421 bp downstream
Tssr21666	transcription start site region 21666	106 bp downstream
Tssr21667	transcription start site region 21667	25 bp downstream
Tssr21668	transcription start site region 21668	324 bp upstream
Tssr21669	transcription start site region 21669	376 bp upstream
Tssr21670	transcription start site region 21670	1106 bp upstream
Tssr21671	transcription start site region 21671	1695 bp upstream
Tssr21672	transcription start site region 21672	1896 bp upstream
Tssr27546	transcription start site region 27546	1825 bp upstream