rs8269698 SNP Detail

Summary

• ID
  rs8269698
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164677661 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ACCTG CCCCGCCTTA GACATTGCCC
  M
  ACGGTCCCTC TTCCTTTACC TGTTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12766859	Ppgb_JC7735_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8269698					SNP	A	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164677661 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12674	CpG island 12674	1324 bp distal
Ctsa	cathepsin A	within coordinates
Rr367364	regulatory region 367364	1870 bp downstream
Tssr21659	transcription start site region 21659	1966 bp downstream
Tssr21660	transcription start site region 21660	1929 bp downstream
Tssr21661	transcription start site region 21661	1889 bp downstream
Tssr21662	transcription start site region 21662	1693 bp downstream
Tssr21663	transcription start site region 21663	1644 bp downstream
Tssr21664	transcription start site region 21664	1603 bp downstream
Tssr21665	transcription start site region 21665	857 bp downstream
Tssr21666	transcription start site region 21666	542 bp downstream
Tssr21667	transcription start site region 21667	461 bp downstream
Tssr21668	transcription start site region 21668	90 bp downstream
Tssr21669	transcription start site region 21669	49 bp downstream
Tssr21670	transcription start site region 21670	670 bp upstream
Tssr21671	transcription start site region 21671	1259 bp upstream
Tssr21672	transcription start site region 21672	1460 bp upstream
Tssr21673	transcription start site region 21673	1627 bp upstream
Tssr27547	transcription start site region 27547	1662 bp downstream
Tssr27548	transcription start site region 27548	1712 bp downstream