rs8269699 SNP Detail

Summary

• ID
  rs8269699
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164677658 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              AGGATTCTTC TGCCCGTTTT
  CAAGTGCCAG GTTACAGGTG TGTATCACCA TGTCTAGCTG CCTTAGTTTC TTTAAACCCT
  AGGCTTGGCC TTTAAAGCAT CAAGCCCTTT GGTCAATTCC AGCTCCGGCC TACACATAAA
  CCAGAGTGGG AATCCTGTGC TGAGATCGTA TGACCTGCCC CGCCTTAGAC ATTGCCCAAC
  S
  GTCCCTCTTC CTTTACCTGT TCCCCAGAAG GCCATGGTAG TAGGCAAAGT AGACCAGGGA
  GTTGTCGTTC TGCTCATAGG AGGCAAGTCC ATTGCCCACA GCCAGCCCCT GCGAAACACG
  AAGCATGCTC GGCTCATCCG AAGGGCGAGA GCGAGGGGGA GCCTCCCTTG ACCTACAACC
  CAGACCTGCA ATCTAGAAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12766860	Ppgb_JC7735_2	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8269699					SNP	G	G	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164677658 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12674	CpG island 12674	1321 bp distal
Ctsa	cathepsin A	within coordinates
Rr367364	regulatory region 367364	1867 bp downstream
Rr569730	regulatory region 569730	1792 bp distal
Tssr21659	transcription start site region 21659	1963 bp downstream
Tssr21660	transcription start site region 21660	1926 bp downstream
Tssr21661	transcription start site region 21661	1886 bp downstream
Tssr21662	transcription start site region 21662	1690 bp downstream
Tssr21663	transcription start site region 21663	1641 bp downstream
Tssr21664	transcription start site region 21664	1600 bp downstream
Tssr21665	transcription start site region 21665	854 bp downstream
Tssr21666	transcription start site region 21666	539 bp downstream
Tssr21667	transcription start site region 21667	458 bp downstream
Tssr21668	transcription start site region 21668	87 bp downstream
Tssr21669	transcription start site region 21669	46 bp downstream
Tssr21670	transcription start site region 21670	673 bp upstream
Tssr21671	transcription start site region 21671	1262 bp upstream
Tssr21672	transcription start site region 21672	1463 bp upstream
Tssr21673	transcription start site region 21673	1630 bp upstream
Tssr27547	transcription start site region 27547	1665 bp downstream
Tssr27548	transcription start site region 27548	1715 bp downstream