rs8269700 SNP Detail

Summary

• ID
  rs8269700
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164677535 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ACAGC CAGCCCCTGC GAAACACGAA
  R
  CATGCTCGGC TCATCCGAAG GGCGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	BALB/cByJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12766862	Ppgb_JC7735_4	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	BALB/cByJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8269700					SNP	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164677535 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12674	CpG island 12674	1198 bp distal
Ctsa	cathepsin A	within coordinates
Rr367364	regulatory region 367364	1744 bp downstream
Tssr21659	transcription start site region 21659	1840 bp downstream
Tssr21660	transcription start site region 21660	1803 bp downstream
Tssr21661	transcription start site region 21661	1763 bp downstream
Tssr21662	transcription start site region 21662	1567 bp downstream
Tssr21663	transcription start site region 21663	1518 bp downstream
Tssr21664	transcription start site region 21664	1477 bp downstream
Tssr21665	transcription start site region 21665	731 bp downstream
Tssr21666	transcription start site region 21666	416 bp downstream
Tssr21667	transcription start site region 21667	335 bp downstream
Tssr21668	transcription start site region 21668	14 bp upstream
Tssr21669	transcription start site region 21669	66 bp upstream
Tssr21670	transcription start site region 21670	796 bp upstream
Tssr21671	transcription start site region 21671	1385 bp upstream
Tssr21672	transcription start site region 21672	1586 bp upstream
Tssr21673	transcription start site region 21673	1753 bp upstream
Tssr27547	transcription start site region 27547	1788 bp downstream
Tssr27548	transcription start site region 27548	1838 bp downstream