rs8269701 SNP Detail

Summary

• ID
  rs8269701
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164677533 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGCCA GCCCCTGCGA AACACGAAGC
  R
  TGCTCGGCTC ATCCGAAGGG CGAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12766863	Ppgb_JC7735_5	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8269701					SNP	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164677533 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12674	CpG island 12674	1196 bp distal
Ctsa	cathepsin A	within coordinates
Rr367364	regulatory region 367364	1742 bp downstream
Rr569730	regulatory region 569730	1667 bp distal
Tssr21659	transcription start site region 21659	1838 bp downstream
Tssr21660	transcription start site region 21660	1801 bp downstream
Tssr21661	transcription start site region 21661	1761 bp downstream
Tssr21662	transcription start site region 21662	1565 bp downstream
Tssr21663	transcription start site region 21663	1516 bp downstream
Tssr21664	transcription start site region 21664	1475 bp downstream
Tssr21665	transcription start site region 21665	729 bp downstream
Tssr21666	transcription start site region 21666	414 bp downstream
Tssr21667	transcription start site region 21667	333 bp downstream
Tssr21668	transcription start site region 21668	16 bp upstream
Tssr21669	transcription start site region 21669	68 bp upstream
Tssr21670	transcription start site region 21670	798 bp upstream
Tssr21671	transcription start site region 21671	1387 bp upstream
Tssr21672	transcription start site region 21672	1588 bp upstream
Tssr21673	transcription start site region 21673	1755 bp upstream
Tssr27547	transcription start site region 27547	1790 bp downstream
Tssr27548	transcription start site region 27548	1840 bp downstream