rs8270072 SNP Detail

Summary

• ID
  rs8270072
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21873274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCGCTGT TGGCAGTGAA
  CACCAGAAAC GCACGGAGCC GCGGACGGTG GGAGCCTGGT GCAGGCTACA TGACTTTCGT
  GACTCACCCC TGTGCGATCG GGGGAACCAA GAAGAAAAGG TTGAACAAGT AGGGAGGGCA
  GGAGGTGATT GGAGAGTTTC GGATTTCTTT GGTCCACATC GTGGGGACCA GAGCATTTTT
  K
  ACTACCACGA TGGTAGTGCC CTAATTCCAA CGTAATACCT GAGTCCATTG ATGGAAAAGA
  ATTATTCCAG CTCCGGCCAC CCAGGGGCGA CCTCCACACC ATCCGCACCA CCCCCATCCC
  CTCCTCCGTT CCCGGAGTTT CCCACCCTTA ACCTAGTCTC CAGGCCCATC CAGGAAGCTC
  TGCTCTACCC ACCCCTCCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss12767242	Prss7_JC7802_1	ROCHEBIO	RPAMM	f	SNP				G	G		G	G	T	G				G		G	G
ss61359792	NES16733452	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G		G	G		T	G	G	G	G		G			G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs8270072					SNP	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61359792	NES16733452	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21873274 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21464	CpG island 21464	1068 bp distal
Cpgi21465	CpG island 21465	within coordinates
D9Mit86	DNA segment, Chr 9, Massachusetts Institute of Technology 86	1991 bp proximal
Epor	erythropoietin receptor	within coordinates
Rr675079	regulatory region 675079	1121 bp distal
Rr675080	regulatory region 675080	440 bp distal
Rr675081	regulatory region 675081	406 bp distal
Rr675082	regulatory region 675082	1518 bp proximal
Tssr2805	transcription start site region 2805	331 bp downstream
Tssr88426	transcription start site region 88426	363 bp downstream
Tssr88427	transcription start site region 88427	408 bp downstream
Tssr88428	transcription start site region 88428	1565 bp downstream
Tssr88429	transcription start site region 88429	1590 bp downstream
Tssr88430	transcription start site region 88430	1617 bp downstream