rs8270115 SNP Detail

Summary

• ID
  rs8270115
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21871857 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GTCTC TCATTCTGGT CCTCATCTCG
  Y
  TGTTGCTGAC GGTTCTGGCC CTGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss12767289	Ptgds2_JC7817_1	ROCHEBIO	RPAMM	f	SNP				C	C		C	C	C	C				C		T	T
ss61359795	NES16733477	PERLEGEN	MM_PANEL2	r	SNP	G	G	G	G		A	G		G	G	A	G	G		A			A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs8270115					SNP	C	C	C	C	C	T	C	C	C	C	T	C	C	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61359795	NES16733477	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21871857 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi21464	CpG island 21464	within coordinates
Cpgi21465	CpG island 21465	901 bp proximal
Epor	erythropoietin receptor	within coordinates
Rr675079	regulatory region 675079	275 bp proximal
Rr675080	regulatory region 675080	956 bp proximal
Rr675081	regulatory region 675081	990 bp proximal
Tssr2805	transcription start site region 2805	1748 bp downstream
Tssr88426	transcription start site region 88426	1780 bp downstream
Tssr88427	transcription start site region 88427	1825 bp downstream