rs8270318 SNP Detail

Summary

• ID
  rs8270318
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:97096807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                AGG
  AAGCAGTCTC ACAATTTGAT GACCTTCCNA AATACATTAA GCCACACCAA ATATGAATTT
  Y
  TGTTAACACA AAATAAAAGG ATTCAGAAAA AAATAAAAGG AAGAGAGAAG AAAAAGGGGT
  GGGGGAAAGG GCTGAGACTT AGTAAAAACA CACTGGGTTA GGTGGCGGGG CTTGTTAGTG
  AGCACACTGG NGACACAGCG GTGCAGCGGA CATCTGGGCC CCACAGCAGT CCCCACTGGC
  CCCTCATATG CACAAGTGGT GAGCCAGGCT CACTGATACT GATCGGNAGA GGTGCAGCAT
  TNNNCCTGTC AGGTATGTTA ACACAAAATA AAAGGATTCA GAAAAAAATA AAAGGAAGAG
  AGAAGAAAAA GGGGTGGGGG AAAGGGCTGA GACTTAGTAA AAACACACTG GGTTAGGTGG
  CGGGGCTTGT TAGTGAGCAC ACTGGNGACA CAGCGGTGCA GCGGACATCT GGGCCCCACA
  GCAGTCCCCA CTGGCCCCTC ATATGCACAA GTGGTGAGCC AGGCTCACTG ATACTGATCG
  GNAGAGGTGC AGCATTNNNC CTGTCAGGTA CATTACTTTT GGGGGGGTTG GGGATCACAC
  AAAAGGGAGG CAGGGAGGGA AC                                         
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
ss12767510	Psa_JC7891_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
rs8270318					SNP	C	C	C	C	C	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:97096807 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Npepps	aminopeptidase puromycin sensitive			mRNA-UTR
				Noncoding-Transcript-Variant
Rr455696	regulatory region 455696			1996 bp distal
Tssr110404	transcription start site region 110404			1020 bp downstream