rs8270319 SNP Detail

Summary

• ID
  rs8270319
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:97096938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                    AGGA AGCAGTCTCA
  CAATTTGATG ACCTTCCNAA ATACATTAAG CCACACCAAA TATGAATTTN TGTTAACACA
  AAATAAAAGG ATTCAGAAAA AAATAAAAGG AAGAGAGAAG AAAAAGGGGT GGGGGAAAGG
  GCTGAGACTT AGTAAAAACA CACTGGGTTA GGTGGCGGGG CTTGTTAGTG AGCACACTGG
  S
  GACACAGCGG TGCAGCGGAC ATCTGGGCCC CACAGCAGTC CCCACTGGCC CCTCATATGC
  ACAAGTGGTG AGCCAGGCTC ACTGATACTG ATCGGNAGAG GTGCAGCATT NNNCCTGTCA
  GGTAACCNGA CAGTTTTGAG CAGAAGGCCT AGCTGATAAT CTTTATTTCT ACTCTTTCAC
  CTCTTATGCA TNTCAGGGTT CCTTGAAGGT TATCANAGGA AATAAAAGCA TATCAGCTCC
  TCTTATTTAA TGTGGCCATC AAAGATGTTT CTGTTATCTA AGGACAGGTN AGGGNTGGGC
  AGAACTAAAG GGAGAAGAAC NCGGGAAGGG AGGGAGGGTG TGTTtttttt tttgttttgt
  tttgttttTT AAAGCTTTTC ATTACTTTTG GGGGGGTTGG GGATCACACA AAAGGGAGGC
  AGGGAGGGAA C                                                     
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac
ss12767511	Psa_JC7891_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac
rs8270319					SNP	C	C	C	C	C	C	C	G	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:97096938 () rs orientation: forward

Symbol	Name	Function Class
Npepps	aminopeptidase puromycin sensitive	within coordinates
Tssr110404	transcription start site region 110404	889 bp downstream