rs8270517 SNP Detail

Summary

• ID
  rs8270517
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88815921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTGAAGA AGTTGGCACT
  TAGAGAAGTC TTCTATTCTA CTTGGGGATA ATCTGTTGAT TTCTCTGCGC AGAGCCCAGG
  TATTGGGACC CAGCCTATTT AAGAAAGACG ACGGTGCAGA AAGAAGAGCT GAGGACGTAG
  CTCAGGCTGG TAAAGCCACT GCCTGGCATA CGTAAGTCCT GCGTTCCATA TCCGGTACCA
  Y
  TTGAAACAGG GTGAGACTGC ACATGCCTGT TAGTCCAGCA CTCAAGAGTG GAGGTAGGAG
  GATCATAAAT TTAAGACCAG CCTTGGCTAT ATAGAAAGTC AGAAGCCAGC TTAAGCTAAA
  TTATTAGACC CTGCCTCAAA ACAAAACAAA AATAACCAAC AAAATCAATA TGTTTTAAAA
  AATTGGGGGG TGGGGCTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12767712	Risc-pending_JC7913_6	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8270517					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88815921 () rs orientation: forward

Symbol	Name	Function Class
Scpep1	serine carboxypeptidase 1	within coordinates
Scpep1os	serine carboxypeptidase 1, opposite strand	within coordinates
Tssr110047	transcription start site region 110047	819 bp upstream
Tssr110048	transcription start site region 110048	802 bp upstream
Tssr110049	transcription start site region 110049	747 bp upstream
Tssr110050	transcription start site region 110050	536 bp upstream
Tssr110051	transcription start site region 110051	498 bp upstream
Tssr110052	transcription start site region 110052	480 bp upstream
Tssr110053	transcription start site region 110053	452 bp upstream
Tssr110054	transcription start site region 110054	385 bp upstream