rs8270519 SNP Detail

Summary

• ID
  rs8270519
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88815950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACA GGGTGAGACT GCACATGCCT
  S
  TTAGTCCAGC ACTCAAGAGT GGAGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12767714	Risc-pending_JC7913_8	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	G	C	C	C	G	G	C		C	C	C		G
ss38806208	mCV23475674	ABI	CRAMUS_MOUSE	f	SNP			C						G		C
ss132546882	ENSMUSSNP5157131	ENSEMBL	ENSEMBL_Sanger	f	SNP			C								C
ss323782840	CHEV_11_88786438	CHEVERUD	SCREENING_POP	f	SNP												C				C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8270519					SNP	C	C	C	C	G	C	C	C	G	G	C	C	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88815950 () rs orientation: forward

Symbol	Name	Function Class
Scpep1	serine carboxypeptidase 1	within coordinates
Scpep1os	serine carboxypeptidase 1, opposite strand	within coordinates
Tssr110047	transcription start site region 110047	848 bp upstream
Tssr110048	transcription start site region 110048	831 bp upstream
Tssr110049	transcription start site region 110049	776 bp upstream
Tssr110050	transcription start site region 110050	565 bp upstream
Tssr110051	transcription start site region 110051	527 bp upstream
Tssr110052	transcription start site region 110052	509 bp upstream
Tssr110053	transcription start site region 110053	481 bp upstream
Tssr110054	transcription start site region 110054	414 bp upstream