rs8270520 SNP Detail

Summary

• ID
  rs8270520
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88815970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTGTTGA TTTCTCTGCG
  CAGAGCCCAG GTATTGGGAC CCAGCCTATT TAAGAAAGAC GACGGTGCAG AAAGAAGAGC
  TGAGGACGTA GCTCAGGCTG GTAAAGCCAC TGCCTGGCAT ACGTAAGTCC TGCGTTCCAT
  ATCCGGTACC ACTTGAAACA GGGTGAGACT GCACATGCCT GTTAGTCCAG CACTCAAGAG
  Y
  GGAGGTAGGA GGATCATAAA TTTAAGACCA GCCTTGGCTA TATAGAAAGT CAGAAGCCAG
  CTTAAGCTAA ATTATTAGAC CCTGCCTCAA AACAAAACAA AAATAACCAA CAAAATCAAT
  ATGTTTTAAA AAATTGGGGG GTGGGGCTTG AGAGAGGTGA AGGCACCCCA CTCACAGATC
  CATATAACAA AAGCCACCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12767715	Risc-pending_JC7913_9	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8270520					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88815970 () rs orientation: forward

Symbol	Name	Function Class
Scpep1	serine carboxypeptidase 1	within coordinates
Scpep1os	serine carboxypeptidase 1, opposite strand	within coordinates
Tssr110047	transcription start site region 110047	868 bp upstream
Tssr110048	transcription start site region 110048	851 bp upstream
Tssr110049	transcription start site region 110049	796 bp upstream
Tssr110050	transcription start site region 110050	585 bp upstream
Tssr110051	transcription start site region 110051	547 bp upstream
Tssr110052	transcription start site region 110052	529 bp upstream
Tssr110053	transcription start site region 110053	501 bp upstream
Tssr110054	transcription start site region 110054	434 bp upstream