rs8270522 SNP Detail

Summary

• ID
  rs8270522
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88815988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAGAGCCC AGGTATTGGG
  ACCCAGCCTA TTTAAGAAAG ACGACGGTGC AGAAAGAAGA GCTGAGGACG TAGCTCAGGC
  TGGTAAAGCC ACTGCCTGGC ATACGTAAGT CCTGCGTTCC ATATCCGGTA CCACTTGAAA
  CAGGGTGAGA CTGCACATGC CTGTTAGTCC AGCACTCAAG AGTGGAGGTA GGAGGATCAT
  R
  AATTTAAGAC CAGCCTTGGC TATATAGAAA GTCAGAAGCC AGCTTAAGCT AAATTATTAG
  ACCCTGCCTC AAAACAAAAC AAAAATAACC AACAAAATCA ATATGTTTTA AAAAATTGGG
  GGGTGGGGCT TGAGAGAGGT GAAGGCACCC CACTCACAGA TCCATATAAC AAAAGCCACC
  TTAACCTTGG CCTCCACTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12767717	Risc-pending_JC7913_11	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8270522					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88815988 () rs orientation: forward

Symbol	Name	Function Class
Scpep1	serine carboxypeptidase 1	within coordinates
Scpep1os	serine carboxypeptidase 1, opposite strand	within coordinates
Tssr110047	transcription start site region 110047	886 bp upstream
Tssr110048	transcription start site region 110048	869 bp upstream
Tssr110049	transcription start site region 110049	814 bp upstream
Tssr110050	transcription start site region 110050	603 bp upstream
Tssr110051	transcription start site region 110051	565 bp upstream
Tssr110052	transcription start site region 110052	547 bp upstream
Tssr110053	transcription start site region 110053	519 bp upstream
Tssr110054	transcription start site region 110054	452 bp upstream