rs8270524 SNP Detail

Summary

• ID
  rs8270524
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88816036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAAAGAA GAGCTGAGGA
  CGTAGCTCAG GCTGGTAAAG CCACTGCCTG GCATACGTAA GTCCTGCGTT CCATATCCGG
  TACCACTTGA AACAGGGTGA GACTGCACAT GCCTGTTAGT CCAGCACTCA AGAGTGGAGG
  TAGGAGGATC ATAAATTTAA GACCAGCCTT GGCTATATAG AAAGTCAGAA GCCAGCTTAA
  R
  CTAAATTATT AGACCCTGCC TCAAAACAAA ACAAAAATAA CCAACAAAAT CAATATGTTT
  TAAAAAATTG GGGGGTGGGG CTTGAGAGAG GTGAAGGCAC CCCACTCACA GATCCATATA
  ACAAAAGCCA CCTTAACCTT GGCCTCCACT GCTTCATGTG CCTGTCCTTC AAAGGGCAGG
  TGATCCTCCC CTTTTCTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12767719	Risc-pending_JC7913_13	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G			G	G	G		A
ss24735888	Risc-pending_JC7913_16	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8270524					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88816036 () rs orientation: forward

Symbol	Name	Function Class
Scpep1	serine carboxypeptidase 1	within coordinates
Scpep1os	serine carboxypeptidase 1, opposite strand	within coordinates
Tssr110047	transcription start site region 110047	934 bp upstream
Tssr110048	transcription start site region 110048	917 bp upstream
Tssr110049	transcription start site region 110049	862 bp upstream
Tssr110050	transcription start site region 110050	651 bp upstream
Tssr110051	transcription start site region 110051	613 bp upstream
Tssr110052	transcription start site region 110052	595 bp upstream
Tssr110053	transcription start site region 110053	567 bp upstream
Tssr110054	transcription start site region 110054	500 bp upstream