rs8270525 SNP Detail

Summary

• ID
  rs8270525
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88816043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTCA GAAGCCAGCT TAAGCTAAAT
  K
  ATTAGACCCT GCCTCAAAAC AAAAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12767720	Risc-pending_JC7913_14	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	T	G	G	G	T	T	G			G	G		T
ss24735889	Risc-pending_JC7913_17	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	T	G	G	G	T	T	G	G	G	G	G	G	T
ss132546886	ENSMUSSNP3242769	ENSEMBL	ENSEMBL_Sanger	f	SNP			G								G
ss323782841	CHEV_11_88786531	CHEVERUD	SCREENING_POP	f	SNP												G				G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8270525					SNP	G	G	G	G	T	G	G	G	T	T	G	G	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88816043 () rs orientation: forward

Symbol	Name	Function Class
Scpep1	serine carboxypeptidase 1	within coordinates
Scpep1os	serine carboxypeptidase 1, opposite strand	within coordinates
Tssr110047	transcription start site region 110047	941 bp upstream
Tssr110048	transcription start site region 110048	924 bp upstream
Tssr110049	transcription start site region 110049	869 bp upstream
Tssr110050	transcription start site region 110050	658 bp upstream
Tssr110051	transcription start site region 110051	620 bp upstream
Tssr110052	transcription start site region 110052	602 bp upstream
Tssr110053	transcription start site region 110053	574 bp upstream
Tssr110054	transcription start site region 110054	507 bp upstream