rs8270526 SNP Detail

Summary

• ID
  rs8270526
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88816074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                  TTCCT GCTTGGTCAC CAGCTTCATC ATCTTCAGGG CCATCTCCCC
  TTGGTCAGAA GGAACCTGGA AGCAAGAAGC ATTGAATTAG TGTTCCTGAT GTAAGGACTG
  GGTCAAGGTC AAGGGTGACT GATACGATCC TTCCAGGGCG AGATCTNGAA AGACTGGCGA
  CAGCTCACTG TAAAGAAAAG ACCTCCTCCA CGCTGGACCA AAGTTCTGGG TCCCCAGTGT
  GTTGGGGCCT GAAGAAGTTG GCACTTAGAG TTCCTGCTTG GTCACCAGCT TCATCATCTT
  CAGGGCCATC TCCCCTTGGT CAGAAGGAAC CTGGAAGCAA GAAGCATTGA ATTAGTGTTC
  CTGATGTAAG GACTGGGTCA AGGTCAAGGG TGACTGATAC GATCCTTCCA GGGCGAGATC
  TNGAAAGACT GGCGACAGCT CACTGTAAAG AAAAGACCTC CTCCACGCTG GACCAAAGTT
  CTGGGTCCCC AGTGTGTTGG GGCCTGAAGA AGTTGGCACT TAGAGgcctt ggctatatag
  aaagtcagaa gccagcttaa nctaaatnat tagaccctgc ctcaaaacaa aacaaAANNA
  W
  AACCNAACAA AATCAATATG TTTTAAAAAA TTGGGGGGT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12767721	Risc-pending_JC7913_15	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T			T	T		A
ss24735890	Risc-pending_JC7913_18	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8270526					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88816074 () rs orientation: forward

Symbol	Name	Function Class
Scpep1	serine carboxypeptidase 1	within coordinates
Scpep1os	serine carboxypeptidase 1, opposite strand	within coordinates
Tssr110047	transcription start site region 110047	972 bp upstream
Tssr110048	transcription start site region 110048	955 bp upstream
Tssr110049	transcription start site region 110049	900 bp upstream
Tssr110050	transcription start site region 110050	689 bp upstream
Tssr110051	transcription start site region 110051	651 bp upstream
Tssr110052	transcription start site region 110052	633 bp upstream
Tssr110053	transcription start site region 110053	605 bp upstream
Tssr110054	transcription start site region 110054	538 bp upstream