rs8270532 SNP Detail

Summary

• ID
  rs8270532
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88816380 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

         TTT ACCCGGCCTT TTTATGACAG TTNTGGACGG GGNANGNCCC CAGCACCGTA
  TGGCACTTTC TCACTAAAGT CAAAGTCAAC AACTCAAATA GATTGTTTTG TTTGTTTGTT
  GGtttttggt ttttcgagac agggtttctc tgtgtagccc tggctgtcct ggaactcact
  ttgtagacca ggctgncctn gaactcanaa ancngcctgc ctctgcctcc caagtttgtt
  tgtttgtttg tttgtttgtt tttttttttt gagacagtct ggtttanccc aggctagtca
  R
  aaatgtccca tgtagggagg atgatgatga tntagatctc atgcctctgc ctnnnnggga
  ttacaggcaa cactgccaca tcctgcttGA GGGTCCTCAG CTACAGAGTG AATTGGAGGC
  CAGCCTCAGA TCGGAGACNC ANAAAAGNGG GAGGATCACC TGCCCTTTGA AGGACAGACA
  CATGAAGCCG TGGAGGCCAN GNTTAAGGTG GCTTTTGTTA TATGGATCTG TGAGTGGGGT
  GCCTTTACCT CTCTCTAGCC CCACCCCCCA ATTTTTTAAA ACATATTGAT TTTGTGGGTT
  ATTTTTGTTT NGTTTTGAGG CAGGGTCTAA AA                              
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	C57BL/6J	CAST/EiJ	NZW/Lac	SPRET/EiJ
ss12767727	Risc-pending_JC7914_6	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	C57BL/6J	CAST/EiJ	NZW/Lac	SPRET/EiJ
rs8270532					SNP	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88816380 () rs orientation: reverse

Symbol	Name	Function Class
Scpep1	serine carboxypeptidase 1	within coordinates
Scpep1os	serine carboxypeptidase 1, opposite strand	within coordinates
Tssr110047	transcription start site region 110047	1278 bp upstream
Tssr110048	transcription start site region 110048	1261 bp upstream
Tssr110049	transcription start site region 110049	1206 bp upstream
Tssr110050	transcription start site region 110050	995 bp upstream
Tssr110051	transcription start site region 110051	957 bp upstream
Tssr110052	transcription start site region 110052	939 bp upstream
Tssr110053	transcription start site region 110053	911 bp upstream
Tssr110054	transcription start site region 110054	844 bp upstream