rs8270538 SNP Detail

Summary

• ID
  rs8270538
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:88816232 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                TTTACCCG GCCTTTTTAT
  GACAGTTNTG GACGGGGNAT GNCCCCANCA CCATATGGCA CTTTCTCACT AAAGTCAAAG
  TCAACAACTC AAATAGATTG TTTTGTTTGN NNNNGGtttt tggtttttcg agacagggtt
  tctctgtgta gccctggctg tcctggaact cactttgtag accaggctgn cctngaactc
  anaaancngc ctgcctctgc ctcccaagtt tgtttgtttg tttgtttgtt tgtttttttt
  ttttgagaca gtctggttta ncccaggcta gtcanaaatg tcccatgtag ggaggatgat
  gatgatntag atctcatgcc tctgcctnnn nnnnngggat tacaggcaac actgccacat
  cctgcttGAG GGTCCTCAGC TACAGAGTGA ATTGGAGGCC AGCCTCAGAT CGGAGACNCA
  R
  AAAAGNGGGA GGATCACCTG CCCTTTGAAG GACAGNCACA TGAAGCNGTG GAGGCCANGN
  TTAAGGTGGC TTTTGTTATA TGGATCTGTG AGTGGGGTGC CTTTACCTCT CTCTAGCCCC
  ACCCCCCAAT TTTTTAAAAC ATATGGATTT TGTGGGTTAT TTTTGTTTNG TTTTGAGGCA
  GGGTCTAAAA                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	C57BL/6J	CAST/EiJ	DBA/2J	NZW/Lac	SPRET/EiJ
ss12767733	Risc-pending_JC7914_12	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	A
ss24748126	Risc-pending_JC7914_22	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	C57BL/6J	CAST/EiJ	DBA/2J	NZW/Lac	SPRET/EiJ
rs8270538					SNP	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88816232 () rs orientation: reverse

Symbol	Name	Function Class
Scpep1	serine carboxypeptidase 1	Intron
Scpep1os	serine carboxypeptidase 1, opposite strand	within coordinates
Tssr110047	transcription start site region 110047	1130 bp upstream
Tssr110048	transcription start site region 110048	1113 bp upstream
Tssr110049	transcription start site region 110049	1058 bp upstream
Tssr110050	transcription start site region 110050	847 bp upstream
Tssr110051	transcription start site region 110051	809 bp upstream
Tssr110052	transcription start site region 110052	791 bp upstream
Tssr110053	transcription start site region 110053	763 bp upstream
Tssr110054	transcription start site region 110054	696 bp upstream