rs8270541 SNP Detail

Summary

• ID
  rs8270541
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88816173 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGCAC ATGAAGCAGT GGAGGCCAAG
  K
  TTAAGGTGGC TTTTGTTATA TGGAT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12767736	Risc-pending_JC7914_15	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G		G	G	T
ss24748131	Risc-pending_JC7914_27	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8270541					SNP	G	G	G	G	G	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88816173 () rs orientation: reverse

Symbol	Name	Function Class
Scpep1	serine carboxypeptidase 1	within coordinates
Scpep1os	serine carboxypeptidase 1, opposite strand	within coordinates
Tssr110047	transcription start site region 110047	1071 bp upstream
Tssr110048	transcription start site region 110048	1054 bp upstream
Tssr110049	transcription start site region 110049	999 bp upstream
Tssr110050	transcription start site region 110050	788 bp upstream
Tssr110051	transcription start site region 110051	750 bp upstream
Tssr110052	transcription start site region 110052	732 bp upstream
Tssr110053	transcription start site region 110053	704 bp upstream
Tssr110054	transcription start site region 110054	637 bp upstream