rs8270735 SNP Detail

Summary

• ID
  rs8270735
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88814674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGTGAGC TTAGATAATG
  CTGCTGTAAT CTGTGAGGAA ACCTTCCCCT TCTGCATGCA GAGCTGGGGT TTGCTCTCTG
  AGGGTGTACC GGAAGCTACC GGATCACCTA TTCACACCTC AAGCTGTGGT TTGAACATTA
  AGCCCGGAGG AGCTTATGAT CTTAATTATA AGGAAATGTG GAAATCTTTT GACTAAACAG
  Y
  CATCCTTCCA CGAGTTTACC TGAAGGAAAC GGAGTGTGCA TAAACTATTA ACTAGTTGAA
  TGGCTCATCA GAGGGCTGTC TTCGACAGGA AGAACTGGAA ACATTCAGGA CCAATTGGGA
  ATTCGGTAAC TAAACATTGG GGCGATCACA GAACAGAATT TTCAGCCGTC ATTAAAAATA
  TCACAACACA TTTATTGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12767934	Risc-pending_JC7931_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8270735					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88814674 () rs orientation: forward

Symbol	Name	Function Class
Scpep1	serine carboxypeptidase 1	172 bp downstream
Scpep1os	serine carboxypeptidase 1, opposite strand	within coordinates
Tssr110047	transcription start site region 110047	420 bp downstream
Tssr110048	transcription start site region 110048	435 bp downstream
Tssr110049	transcription start site region 110049	489 bp downstream
Tssr110050	transcription start site region 110050	691 bp downstream
Tssr110051	transcription start site region 110051	732 bp downstream
Tssr110052	transcription start site region 110052	756 bp downstream
Tssr110053	transcription start site region 110053	784 bp downstream
Tssr110054	transcription start site region 110054	851 bp downstream