rs8270736 SNP Detail

Summary

• ID
  rs8270736
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88814711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACCTTCC CCTTCTGCAT
  GCAGAGCTGG GGTTTGCTCT CTGAGGGTGT ACCGGAAGCT ACCGGATCAC CTATTCACAC
  CTCAAGCTGT GGTTTGAACA TTAAGCCCGG AGGAGCTTAT GATCTTAATT ATAAGGAAAT
  GTGGAAATCT TTTGACTAAA CAGCCATCCT TCCACGAGTT TACCTGAAGG AAACGGAGTG
  Y
  GCATAAACTA TTAACTAGTT GAATGGCTCA TCAGAGGGCT GTCTTCGACA GGAAGAACTG
  GAAACATTCA GGACCAATTG GGAATTCGGT AACTAAACAT TGGGGCGATC ACAGAACAGA
  ATTTTCAGCC GTCATTAAAA ATATCACAAC ACATTTATTG ATGGGAAAAG AAGTGCGGGT
  CATGTCGACA TGGGAACGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12767935	Risc-pending_JC7931_3	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8270736					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88814711 () rs orientation: forward

Symbol	Name	Function Class
Scpep1	serine carboxypeptidase 1	135 bp downstream
Scpep1os	serine carboxypeptidase 1, opposite strand	within coordinates
Tssr110047	transcription start site region 110047	383 bp downstream
Tssr110048	transcription start site region 110048	398 bp downstream
Tssr110049	transcription start site region 110049	452 bp downstream
Tssr110050	transcription start site region 110050	654 bp downstream
Tssr110051	transcription start site region 110051	695 bp downstream
Tssr110052	transcription start site region 110052	719 bp downstream
Tssr110053	transcription start site region 110053	747 bp downstream
Tssr110054	transcription start site region 110054	814 bp downstream