rs8270738 SNP Detail

Summary

• ID
  rs8270738
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88814757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTACCGGA AGCTACCGGA
  TCACCTATTC ACACCTCAAG CTGTGGTTTG AACATTAAGC CCGGAGGAGC TTATGATCTT
  AATTATAAGG AAATGTGGAA ATCTTTTGAC TAAACAGCCA TCCTTCCACG AGTTTACCTG
  AAGGAAACGG AGTGTGCATA AACTATTAAC TAGTTGAATG GCTCATCAGA GGGCTGTCTT
  Y
  GACAGGAAGA ACTGGAAACA TTCAGGACCA ATTGGGAATT CGGTAACTAA ACATTGGGGC
  GATCACAGAA CAGAATTTTC AGCCGTCATT AAAAATATCA CAACACATTT ATTGATGGGA
  AAAGAAGTGC GGGTCATGTC GACATGGGAA CGAAGCAGAC AGCAAAATAG CGTACAATAT
  GGATTTCATT TTTGTAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12767937	Risc-pending_JC7931_5	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8270738					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88814757 () rs orientation: forward

Symbol	Name	Function Class
Scpep1	serine carboxypeptidase 1	89 bp downstream
Scpep1os	serine carboxypeptidase 1, opposite strand	within coordinates
Tssr110047	transcription start site region 110047	337 bp downstream
Tssr110048	transcription start site region 110048	352 bp downstream
Tssr110049	transcription start site region 110049	406 bp downstream
Tssr110050	transcription start site region 110050	608 bp downstream
Tssr110051	transcription start site region 110051	649 bp downstream
Tssr110052	transcription start site region 110052	673 bp downstream
Tssr110053	transcription start site region 110053	701 bp downstream
Tssr110054	transcription start site region 110054	768 bp downstream