rs8270742 SNP Detail

Summary

• ID
  rs8270742
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88814808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTAAGCC CGGAGGAGCT
  TATGATCTTA ATTATAAGGA AATGTGGAAA TCTTTTGACT AAACAGCCAT CCTTCCACGA
  GTTTACCTGA AGGAAACGGA GTGTGCATAA ACTATTAACT AGTTGAATGG CTCATCAGAG
  GGCTGTCTTC GACAGGAAGA ACTGGAAACA TTCAGGACCA ATTGGGAATT CGGTAACTAA
  M
  CATTGGGGCG ATCACAGAAC AGAATTTTCA GCCGTCATTA AAAATATCAC AACACATTTA
  TTGATGGGAA AAGAAGTGCG GGTCATGTCG ACATGGGAAC GAAGCAGACA GCAAAATAGC
  GTACAATATG GATTTCATTT TTGTAAAAAT ATATATGTAG CAAATAAAAG ACCCGTAGTC
  AGAGACACCT AGTTGGCAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12767941	Risc-pending_JC7931_9	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8270742					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88814808 () rs orientation: forward

Symbol	Name	Function Class
Scpep1	serine carboxypeptidase 1	38 bp downstream
Scpep1os	serine carboxypeptidase 1, opposite strand	within coordinates
Tssr110047	transcription start site region 110047	286 bp downstream
Tssr110048	transcription start site region 110048	301 bp downstream
Tssr110049	transcription start site region 110049	355 bp downstream
Tssr110050	transcription start site region 110050	557 bp downstream
Tssr110051	transcription start site region 110051	598 bp downstream
Tssr110052	transcription start site region 110052	622 bp downstream
Tssr110053	transcription start site region 110053	650 bp downstream
Tssr110054	transcription start site region 110054	717 bp downstream