rs8270746 SNP Detail

Summary

• ID
  rs8270746
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88814900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACGGAGT GTGCATAAAC
  TATTAACTAG TTGAATGGCT CATCAGAGGG CTGTCTTCGA CAGGAAGAAC TGGAAACATT
  CAGGACCAAT TGGGAATTCG GTAACTAAAC ATTGGGGCGA TCACAGAACA GAATTTTCAG
  CCGTCATTAA AAATATCACA ACACATTTAT TGATGGGAAA AGAAGTGCGG GTCATGTCGA
  Y
  ATGGGAACGA AGCAGACAGC AAAATAGCGT ACAATATGGA TTTCATTTTT GTAAAAATAT
  ATATGTAGCA AATAAAAGAC CCGTAGTCAG AGACACCTAG TTGGCAGCTC AGTGGGTGTT
  TAAGTATTTT CTTTGTCTCT CCCACTGCTT TTGTCTATAA ATCATGTGGT TTGCTTTTGC
  TCTTTTTTGG GGGTGGGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12767945	Risc-pending_JC7931_13	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8270746					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88814900 () rs orientation: forward

Symbol	Name	Function Class
Scpep1	serine carboxypeptidase 1	within coordinates
Scpep1os	serine carboxypeptidase 1, opposite strand	within coordinates
Tssr110047	transcription start site region 110047	194 bp downstream
Tssr110048	transcription start site region 110048	209 bp downstream
Tssr110049	transcription start site region 110049	263 bp downstream
Tssr110050	transcription start site region 110050	465 bp downstream
Tssr110051	transcription start site region 110051	506 bp downstream
Tssr110052	transcription start site region 110052	530 bp downstream
Tssr110053	transcription start site region 110053	558 bp downstream
Tssr110054	transcription start site region 110054	625 bp downstream