rs8272216 SNP Detail

Summary

• ID
  rs8272216
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45648948 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGGGA AGGAACCAAA GCACTTCCCC
  Y
  TTGGGGTAAT CCGACCAAGA GTGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac
ss12769467	Lap3_JC7451_4	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac
rs8272216					SNP	T	T	T	T	T	T	T	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45648948 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi15838	CpG island 15838	1512 bp proximal
Gm71433	predicted gene, 71433	within coordinates
Lap3	leucine aminopeptidase 3	1768 bp upstream
Rr399075	regulatory region 399075	1530 bp upstream
Rr611067	regulatory region 611067	206 bp proximal
Rr611068	regulatory region 611068	769 bp proximal
Rr611069	regulatory region 611069	1613 bp proximal
Rr611070	regulatory region 611070	1779 bp proximal
Tssr1476	transcription start site region 1476	1768 bp upstream
Tssr46135	transcription start site region 46135	1779 bp upstream
Tssr46136	transcription start site region 46136	1843 bp upstream
Tssr46137	transcription start site region 46137	1875 bp upstream