rs8272217 SNP Detail

Summary

• ID
  rs8272217
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45649926 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GCATACTTTA ATGTAGCATA
  TCTGCCATCC TTCATTATCC AATAAGGGCA AGAAGTACAG TGATTACAAA AACTGTTTTG
  AAGAGTGTCT TATGTAGACA TCCGGATATG GGCCATGATT GTCCCCATTA GTAGCCCACC
  CTCACTACTG ACAAGGCTCA TATTTTAAAG CTTTGGTCAG CAGCTCTTGG TCAGCAGCTC
  S
  TGGTGCTGCA GGGAGGAGGT GGAACACGTA GAACATGGGA CCTAGTAGAA AGAAGTTGGG
  AGGTTTCAAG GAAAATGCTG TGATCCCAGG ACCCGGCTGC CTGTCTCTGA TTCACCACAG
  ATGAAGAGGC ATCCCATCGT ATGTGTTCAG CATAATTGCT ATGCTGGCCC TAAACCCGTG
  CACTGAATGA CCACGGGAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12769468	Lap3_JC7452_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8272217					SNP	G	G	G	G	G	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45649926 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi15838	CpG island 15838	534 bp proximal
Gm71433	predicted gene, 71433	within coordinates
Lap3	leucine aminopeptidase 3	790 bp upstream
Rr399075	regulatory region 399075	552 bp upstream
Rr611067	regulatory region 611067	376 bp distal
Rr611068	regulatory region 611068	within coordinates
Rr611069	regulatory region 611069	635 bp proximal
Rr611070	regulatory region 611070	801 bp proximal
Tssr1476	transcription start site region 1476	790 bp upstream
Tssr46135	transcription start site region 46135	801 bp upstream
Tssr46136	transcription start site region 46136	865 bp upstream
Tssr46137	transcription start site region 46137	897 bp upstream