rs8272220 SNP Detail

Summary

• ID
  rs8272220
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45649891 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGGGA GGAGGTGGAA CACGTAGAAC
  R
  TGGGACCTAG TAGAAAGAAG TTGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12769471	Lap3_JC7452_4	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8272220					SNP	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45649891 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi15838	CpG island 15838	569 bp proximal
Gm71433	predicted gene, 71433	within coordinates
Lap3	leucine aminopeptidase 3	825 bp upstream
Rr399075	regulatory region 399075	587 bp upstream
Rr611067	regulatory region 611067	341 bp distal
Rr611068	regulatory region 611068	within coordinates
Rr611069	regulatory region 611069	670 bp proximal
Rr611070	regulatory region 611070	836 bp proximal
Tssr1476	transcription start site region 1476	825 bp upstream
Tssr46135	transcription start site region 46135	836 bp upstream
Tssr46136	transcription start site region 46136	900 bp upstream
Tssr46137	transcription start site region 46137	932 bp upstream