rs8272231 SNP Detail

Summary

• ID
  rs8272231
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45649639 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CAGGACCCGG CTGCCTGTCT
  CTGATTCACC ACAGATGAAG AGGCATCCCA TCGTATGTGT TCAGCATAAT TGCTATGCTG
  GCCCTAAACC CGTGCACTGA ATGACCACGG GAACCTCTGG AGCTAGGAAC TAAAGTCTTT
  CCTCTTTTTA ATTTGACAGC TTCAGAAAGT TTTGTCCTGG TGATAAAAAG GTTACTAACG
  W
  AATAAGATCA AGTTCCTTCT GCCTTTTTTA TTTTGTTTAA GGACATTTCT TCCACAAGAA
  ATGCCTCCAG ACCATCCCAC TGTGGGTTTT ATGTCTCCTA CTCCCAAAGC AACCTGTCTC
  AAATTGCTAA TCACCTGTAT CCTGCTCGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTATGTGTG TGTGTGTAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C57BL/6J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12769482	Lap3_JC7452_15	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C57BL/6J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8272231					SNP	T	T	T	T	T	T	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45649639 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi15838	CpG island 15838	821 bp proximal
Gm71433	predicted gene, 71433	within coordinates
Lap3	leucine aminopeptidase 3	1077 bp upstream
Rr399075	regulatory region 399075	839 bp upstream
Rr611067	regulatory region 611067	89 bp distal
Rr611068	regulatory region 611068	78 bp proximal
Rr611069	regulatory region 611069	922 bp proximal
Rr611070	regulatory region 611070	1088 bp proximal
Tssr1476	transcription start site region 1476	1077 bp upstream
Tssr46135	transcription start site region 46135	1088 bp upstream
Tssr46136	transcription start site region 46136	1152 bp upstream
Tssr46137	transcription start site region 46137	1184 bp upstream