rs8272240 SNP Detail

Summary

• ID
  rs8272240
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45651493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTACGCTTC CAGAGTAGCC
  AGTCACAGGG CCTGGACCCC TCCCCCCGCT GAAGTGAAGT GGAAGGCCCT GGGGGAGGAA
  ACTGCTGGAT TGGGTTTCTG TCCTTTTAGG GGAAAGGGTT TTATTGAGAG AGGTCATCTT
  GAAATTGGAA GAGGGTCTTC TCCATAGTCT GAGAAATTAT GAAGGACCCT CAGATGGGAA
  R
  AGTCTGGAAG GGCTCATTGG AGTACTTCCA GGTCATACTT CCAGGACCTG GTGAGGGAGG
  AATGTTCCAG ATGGAGCTTT GAACTCAGGT CGCCTGCAGT TATCACAGAT AGCAGAGGAG
  TTAGGCAGAC ACCTTTCCAG CCCTGGCCGG TAACATTGGA TTGTCCCAGG TTGGTCTCAT
  GGAACCCCAG AATGAACAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	BALB/cByJ	C57BL/6J	NZB/BlNJ
ss12769491	Lap3_JC7453_6	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	BALB/cByJ	C57BL/6J	NZB/BlNJ
rs8272240					SNP	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45651493 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15838	CpG island 15838	101 bp distal
Gm71433	predicted gene, 71433	894 bp upstream
Lap3	leucine aminopeptidase 3	within coordinates
Rr377893	regulatory region 377893	686 bp upstream
Rr399075	regulatory region 399075	714 bp downstream
Rr611067	regulatory region 611067	1943 bp distal
Rr611068	regulatory region 611068	933 bp distal
Rr611069	regulatory region 611069	767 bp distal
Rr611070	regulatory region 611070	within coordinates
Rr611071	regulatory region 611071	1217 bp proximal
Tssr1476	transcription start site region 1476	767 bp downstream
Tssr46135	transcription start site region 46135	714 bp downstream
Tssr46136	transcription start site region 46136	685 bp downstream
Tssr46137	transcription start site region 46137	653 bp downstream