rs8272246 SNP Detail

Summary

• ID
  rs8272246
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45651601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGAAAGGG TTTTATTGAG
  AGAGGTCATC TTGAAATTGG AAGAGGGTCT TCTCCATAGT CTGAGAAATT ATGAAGGACC
  CTCAGATGGG AAAAGTCTGG AAGGGCTCAT TGGAGTACTT CCAGGTCATA CTTCCAGGAC
  CTGGTGAGGG AGGAATGTTC CAGATGGAGC TTTGAACTCA GGTCGCCTGC AGTTATCACA
  R
  ATAGCAGAGG AGTTAGGCAG ACACCTTTCC AGCCCTGGCC GGTAACATTG GATTGTCCCA
  GGTTGGTCTC ATGGAACCCC AGAATGAACA ATCTTGGGAA AGTTAGAACC TAGCACTTAC
  CATTGCTAAG GACGCCTGTT TTCTTCAGTG GAAAGATGGG TCCGGAGTAC CTGGGGTGTT
  TTTTGGAAAG GGCCCTGACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C57BL/6J	NZB/BlNJ
ss12769497	Lap3_JC7453_12	ROCHEBIO	RPAMM	f	SNP	G	G	G	A
ss24735830	Lap3_JC7453_13	ROCHEBIO	RPAMM	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C57BL/6J	NZB/BlNJ
rs8272246					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45651601 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15838	CpG island 15838	209 bp distal
Gm71433	predicted gene, 71433	1002 bp upstream
Lap3	leucine aminopeptidase 3	within coordinates
Rr377893	regulatory region 377893	578 bp upstream
Rr399075	regulatory region 399075	822 bp downstream
Rr611068	regulatory region 611068	1041 bp distal
Rr611069	regulatory region 611069	875 bp distal
Rr611070	regulatory region 611070	within coordinates
Rr611071	regulatory region 611071	1109 bp proximal
Tssr1476	transcription start site region 1476	875 bp downstream
Tssr46135	transcription start site region 46135	822 bp downstream
Tssr46136	transcription start site region 46136	793 bp downstream
Tssr46137	transcription start site region 46137	761 bp downstream