rs8272407 SNP Detail

Summary

• ID
  rs8272407
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45650486 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              ACCTGTGCGG GGCCTTGGGG
  GCGGGGCCGT CGGCAACTGG GCGGAGACCC GCTACTGAGC CTTAGGGAAG GGCGGCAGGC
  CCTTGGGGGC GGGGCTTCTG TTCTTGCGGG CCGGCGTCGT GGGCGTGGTT TCTGCGGGCT
  CAGGGGCGTG TCGGCTTGCT CGTGCTCGCG TGGGAAGCCT GAGAATTTGG TTTAAGGCAG
  W
  TTAACAGAAG TATGTCAATT TTATTTAACA AGTTTGTGTA TACATGGAAG CCCTTACAGG
  AAAATGAGGA TCCTGAAAGT GATCAGGTCC AAGTGCTTAT ATTGAATAGT AAATAGTTAT
  GAAAAAGTAA CTAAGCATAA AGGAAAACAA AAAGAATGTA ATAATTAGCT AAATAAGGTT
  CATTTGGGCA GATTTCTAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	SPRET/EiJ
ss12769658	Lap3_JC7466_1	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	SPRET/EiJ
rs8272407					SNP	T	T	T	T	T	T	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45650486 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi15838	CpG island 15838	within coordinates
Gm71433	predicted gene, 71433	within coordinates
Lap3	leucine aminopeptidase 3	230 bp upstream
Rr377893	regulatory region 377893	1693 bp upstream
Rr399075	regulatory region 399075	within coordinates
Rr611067	regulatory region 611067	936 bp distal
Rr611068	regulatory region 611068	within coordinates
Rr611069	regulatory region 611069	75 bp proximal
Rr611070	regulatory region 611070	241 bp proximal
Tssr1476	transcription start site region 1476	230 bp upstream
Tssr46135	transcription start site region 46135	241 bp upstream
Tssr46136	transcription start site region 46136	305 bp upstream
Tssr46137	transcription start site region 46137	337 bp upstream