rs8272417 SNP Detail

Summary

• ID
  rs8272417
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45650276 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGGGC AGATTTCTAG CTTCCTTAAC
  K
  CCTCACCTCG GGTAAAAGTA TTTGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	SPRET/EiJ
ss12769668	Lap3_JC7466_11	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	SPRET/EiJ
rs8272417					SNP	G	G	G	G	G	G	G	G	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45650276 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi15838	CpG island 15838	184 bp proximal
Gm71433	predicted gene, 71433	within coordinates
Lap3	leucine aminopeptidase 3	440 bp upstream
Rr377893	regulatory region 377893	1903 bp upstream
Rr399075	regulatory region 399075	202 bp upstream
Rr611067	regulatory region 611067	726 bp distal
Rr611068	regulatory region 611068	within coordinates
Rr611069	regulatory region 611069	285 bp proximal
Rr611070	regulatory region 611070	451 bp proximal
Tssr1476	transcription start site region 1476	440 bp upstream
Tssr46135	transcription start site region 46135	451 bp upstream
Tssr46136	transcription start site region 46136	515 bp upstream
Tssr46137	transcription start site region 46137	547 bp upstream