rs8272435 SNP Detail

Summary

• ID
  rs8272435
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45650025 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTTGA AGAGTGTCTT ATGTAGACAT
  M
  CGGATATGGG CCATGATTGT CCCCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12769686	Lap3_JC7466_29	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	A	C	C	C	C		A
ss24747932	Lap3_JC7466_32	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	A	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8272435					SNP	C	C	C	C	A	C	C	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45650025 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi15838	CpG island 15838	435 bp proximal
Gm71433	predicted gene, 71433	within coordinates
Lap3	leucine aminopeptidase 3	691 bp upstream
Rr399075	regulatory region 399075	453 bp upstream
Rr611067	regulatory region 611067	475 bp distal
Rr611068	regulatory region 611068	within coordinates
Rr611069	regulatory region 611069	536 bp proximal
Rr611070	regulatory region 611070	702 bp proximal
Tssr1476	transcription start site region 1476	691 bp upstream
Tssr46135	transcription start site region 46135	702 bp upstream
Tssr46136	transcription start site region 46136	766 bp upstream
Tssr46137	transcription start site region 46137	798 bp upstream