rs8273027 SNP Detail

Summary

• ID
  rs8273027
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:104306240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                            A GCCTCCTGAG GTACAAAGAG
  TNATGNGAGA ANATTTCCCT GTGTGTCCTT CCACTGCTNG TTCCCATGGG TTAAGGATTT
  Y
  TGCACTGCAC CAGATATTTC TCCCACTGCC TTACAACTAA CCCCCCCCCC AACACCTAGC
  TTCATGCACC AAATGAACTC AGGGGCCTTA AGATTTCATA GACTTGTCAT CAAAGGGTTA
  AGATAGGACC TGTGATAAAA AACTGCTCCA AGGTAACAGA GTTCAGCCTA AGGAGGGGGC
  AGCTGGAGGT GACAAAAGTG CAAAGTGCAN ACAGGGCTTA CACCCATCCC CCACTCCTAT
  TCTGATTTTT CTTGTTGCAC TGCACCAGAT ATTTCTCCCA CTGCCTTACA ACTAACCCCC
  CCCCCAACAC CTAGCTTCAT GCACCAAATG AACTCAGGGG CCTTAAGATT TCATAGACTT
  GTCATCAAAG GGTTAAGATA GGACCTGTGA TAAAAAACTG CTCCAAGGTA ACAGAGTTCA
  GCCTAAGGAG GGGGCAGCTG GAGGTGACAA AAGTGCAAAG TGCANACAGG GCTTACACCC
  ATCCCCCACT CCTATTCTGA TTTTTCTTGT CANCCTGAAA AACAA                
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12770284	Serpina3k_JC8000_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8273027					SNP	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:104306240 () rs orientation: forward

Symbol	Name	Function Class
Serpina3k	serine (or cysteine) peptidase inhibitor, clade A, member 3K	within coordinates
Tssr114842	transcription start site region 114842	1565 bp downstream
Tssr114843	transcription start site region 114843	880 bp downstream
Tssr114844	transcription start site region 114844	744 bp downstream
Tssr114845	transcription start site region 114845	712 bp downstream
Tssr114846	transcription start site region 114846	623 bp downstream
Tssr114847	transcription start site region 114847	600 bp downstream
Tssr114848	transcription start site region 114848	502 bp upstream
Tssr114849	transcription start site region 114849	529 bp upstream
Tssr114850	transcription start site region 114850	546 bp upstream
Tssr114851	transcription start site region 114851	605 bp upstream
Tssr114852	transcription start site region 114852	662 bp upstream
Tssr114853	transcription start site region 114853	873 bp upstream
Tssr114854	transcription start site region 114854	1016 bp upstream
Tssr117574	transcription start site region 117574	888 bp downstream