rs8273028 SNP Detail

Summary

• ID
  rs8273028
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:104306449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

           A GCCTCCTGAG GTACAAAGAG TNATGNGAGA ANATTTCCCT GTGTGTCCTT
  CCACTGCTNG TTCCCATGGG TTAAGGATTT NTGCACTGCA CCAGATATTT CTCCCACTGC
  CTTACAACTA ACCCCCCCCC CAACACCTAG CTTCATGCAC CAAATGAACT CAGGGGCCTT
  AAGATTTCAT AGACTTGTCA TCAAAGGGTT AAGATAGGAC CTGTGATAAA AAACTGCTCC
  AAGGTAACAG AGTTCAGCCT AAGGAGGGGG CAGCTGGAGG TGACAAAAGT GCAAAGTGCA
  R
  ACAGGGCTTA CACCCATCCC CCACTCCTAT TCTGATTTTT CTTGTGACCC TANCATGTCC
  CTTGAAATCT CTGGATCTTG GTTCTCTACT ATGAAAATTG GCTTCTGTGA CAGCACTTCC
  TCCATGGAAG TAGGGAGCTC AGGATGGAGT ACTGCACCTG AGAGGCCAGA TCACCTCCTG
  TGGGCAGTCA CAGAGTCAGG AAGGGCAACA GAGCAGAGCA CAACGCCAGC CAGGGTGGGA
  AAACTATGAG ATACTCAGAG CTCCAAAAGG TCTTCCCAGA CTCAAAGGAT GTTTTCTTTC
  CANCCTGAAA AACAA                                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	BALB/cByJ	BALB/cJ	DBA/2J
ss12770285	Serpina3k_JC8000_3	ROCHEBIO	RPAMM	f	SNP	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	BALB/cByJ	BALB/cJ	DBA/2J
rs8273028					SNP	G	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:104306449 () rs orientation: forward

Symbol	Name	Function Class
Serpina3k	serine (or cysteine) peptidase inhibitor, clade A, member 3K	within coordinates
Tssr114842	transcription start site region 114842	1774 bp downstream
Tssr114843	transcription start site region 114843	1089 bp downstream
Tssr114844	transcription start site region 114844	953 bp downstream
Tssr114845	transcription start site region 114845	921 bp downstream
Tssr114846	transcription start site region 114846	832 bp downstream
Tssr114847	transcription start site region 114847	809 bp downstream
Tssr114848	transcription start site region 114848	293 bp upstream
Tssr114849	transcription start site region 114849	320 bp upstream
Tssr114850	transcription start site region 114850	337 bp upstream
Tssr114851	transcription start site region 114851	396 bp upstream
Tssr114852	transcription start site region 114852	453 bp upstream
Tssr114853	transcription start site region 114853	664 bp upstream
Tssr114854	transcription start site region 114854	807 bp upstream
Tssr117574	transcription start site region 117574	679 bp downstream