rs8273029 SNP Detail

Summary

• ID
  rs8273029
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:104306502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATTC TGATTTTTCT TGTGACCCTA
  M
  CATGTCCCTT GAAATCTCTG GATCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss12770286	Serpina3k_JC8000_4	ROCHEBIO	RPAMM	f	SNP	A		A	A	C	A	C	C		A	A		C							A	A				A
ss24736575	Serpina3k_JC8000_6	ROCHEBIO	RPAMM	f	SNP	A		A	A	C	A	C	C		A	A		C			A	A			A	A			A	A
ss47259090	NES11403898	PERLEGEN	MM_PANEL2	f	SNP		A		A	C		C		A	A		C	C	A	A			C	C			A	A			C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs8273029					SNP	A	A	A	A	C	A	C	C	A	A	A	C	C	A	A	A	A	C	C	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47259090	NES11403898	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:104306502 () rs orientation: forward

Symbol	Name	Function Class
Serpina3k	serine (or cysteine) peptidase inhibitor, clade A, member 3K	within coordinates
Tssr114842	transcription start site region 114842	1827 bp downstream
Tssr114843	transcription start site region 114843	1142 bp downstream
Tssr114844	transcription start site region 114844	1006 bp downstream
Tssr114845	transcription start site region 114845	974 bp downstream
Tssr114846	transcription start site region 114846	885 bp downstream
Tssr114847	transcription start site region 114847	862 bp downstream
Tssr114848	transcription start site region 114848	240 bp upstream
Tssr114849	transcription start site region 114849	267 bp upstream
Tssr114850	transcription start site region 114850	284 bp upstream
Tssr114851	transcription start site region 114851	343 bp upstream
Tssr114852	transcription start site region 114852	400 bp upstream
Tssr114853	transcription start site region 114853	611 bp upstream
Tssr114854	transcription start site region 114854	754 bp upstream
Tssr117574	transcription start site region 117574	626 bp downstream