rs8273048 SNP Detail

Summary

• ID
  rs8273048
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:104305398 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ACCTC AACAACTTGT CTGCCTTTAC
  Y
  CTGTACTTTA CTTTCACACT GATGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss12770305	Serpina3k_JC8004_2	ROCHEBIO	RPAMM	f	SNP	C			T	T	C	T	C	C		T	T		C					T	T			C
ss38890966	mCV24512270	ABI	CRAMUS_MOUSE	r	SNP			G		A							A		G
ss47259069	NES11404003	PERLEGEN	MM_PANEL2	r	SNP		G			A	G		G		G	A		G	G	G	G	G	G			A	A		G
ss138018970	ENSMUSSNP5292667	ENSEMBL	ENSEMBL_Sanger	r	SNP			G		A									G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs8273048					SNP	C	C	C	T	T	C	T	C	C	C	T	T	C	C	C	C	C	C	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47259069	NES11404003	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:104305398 () rs orientation: reverse

Symbol	Name	Function Class
Serpina3k	serine (or cysteine) peptidase inhibitor, clade A, member 3K	Intron
Tssr114842	transcription start site region 114842	723 bp downstream
Tssr114843	transcription start site region 114843	38 bp downstream
Tssr114844	transcription start site region 114844	56 bp upstream
Tssr114845	transcription start site region 114845	115 bp upstream
Tssr114846	transcription start site region 114846	200 bp upstream
Tssr114847	transcription start site region 114847	224 bp upstream
Tssr114848	transcription start site region 114848	1344 bp upstream
Tssr114849	transcription start site region 114849	1371 bp upstream
Tssr114850	transcription start site region 114850	1388 bp upstream
Tssr114851	transcription start site region 114851	1447 bp upstream
Tssr114852	transcription start site region 114852	1504 bp upstream
Tssr114853	transcription start site region 114853	1715 bp upstream
Tssr114854	transcription start site region 114854	1858 bp upstream
Tssr117574	transcription start site region 117574	1730 bp downstream