rs8273049 SNP Detail

Summary

• ID
  rs8273049
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:104305297 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TCAGA GAAAAGAGGT TGCTCAGTTG
  R
  TATGGCAAGA GACATGGCTC AGTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss12770306	Serpina3k_JC8004_3	ROCHEBIO	RPAMM	f	SNP	A			G	G	G	G	G	G		G	G		G					G	G			G
ss38889152	mCV24512271	ABI	CRAMUS_MOUSE	r	SNP			T		C							C		C
ss47259066	NES11404001	PERLEGEN	MM_PANEL2	r	SNP		T			C	C		C		T	C		C	C	T	C	C	C			C	C		C
ss138018968	ENSMUSSNP5106461	ENSEMBL	ENSEMBL_Sanger	r	SNP			T		C									C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs8273049					SNP	A	A	A	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47259066	NES11404001	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:104305297 () rs orientation: reverse

Symbol	Name	Function Class
Serpina3k	serine (or cysteine) peptidase inhibitor, clade A, member 3K	within coordinates
Tssr114842	transcription start site region 114842	622 bp downstream
Tssr114843	transcription start site region 114843	30 bp upstream
Tssr114844	transcription start site region 114844	157 bp upstream
Tssr114845	transcription start site region 114845	216 bp upstream
Tssr114846	transcription start site region 114846	301 bp upstream
Tssr114847	transcription start site region 114847	325 bp upstream
Tssr114848	transcription start site region 114848	1445 bp upstream
Tssr114849	transcription start site region 114849	1472 bp upstream
Tssr114850	transcription start site region 114850	1489 bp upstream
Tssr114851	transcription start site region 114851	1548 bp upstream
Tssr114852	transcription start site region 114852	1605 bp upstream
Tssr114853	transcription start site region 114853	1816 bp upstream
Tssr114854	transcription start site region 114854	1959 bp upstream
Tssr117574	transcription start site region 117574	1831 bp downstream