rs8273786 SNP Detail

Summary

• ID
  rs8273786
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157970731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

           N AAAAACAGGG GTTTTTTTTT TTTTTTCNGT CATTTTCCAC AAATCCTATC
  M
  CCATAGGANA CCAGGAAATC CTGAGCCCAC CTCTCTGGCC TCCCTTGGAG CAGTGTCAGT
  ANCACCCTCT TTAGTGGGGA CGCTGAGCCC TTTGGCACCN CCAGGTCTCG TTGGCAAACC
  TCTCTATTCC TCAGTTCTGG CTACGTTCCT GCCCTCAGGC CCTGCCTGGT CCAGGGCCCC
  TNTTTACCCA CCTGAACCCT NCNAACCCCA GCTCCCTGCT CCAGCCCTGG TCTATGGGAT
  TGGCTCAATC CTTTCCCATA GGANACCAGG AAATCCTGAG CCCACCTCTC TGGCCTCCCT
  TGGAGCAGTG TCAGTANCAC CCTCTTTAGT GGGGACGCTG AGCCCTTTGG CACCNCCAGG
  TCTCGTTGGC AAACCTCTCT ATTCCTCAGT TCTGGCTACG TTCCTGCCCT CAGGCCCTGC
  CTGGTCCAGG GCCCCTNTTT ACCCACCTGA ACCCTNCNAA CCCCAGCTCC CTGCTCCAGC
  CCTGGTCTAT GGGATTGGCT CAATCCTTTC CA                              
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	BALB/cJ
ss12771046	Tgm2_JC8148_1	ROCHEBIO	RPAMM	f	SNP	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	BALB/cJ
rs8273786					SNP	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157970731 () rs orientation: forward

Symbol	Name	Function Class
Rr568653	regulatory region 568653	1216 bp distal
Rr568654	regulatory region 568654	76 bp distal
Rr568655	regulatory region 568655	989 bp proximal
Rr568656	regulatory region 568656	1198 bp proximal
Tgm2	transglutaminase 2, C polypeptide	within coordinates
Tssr27210	transcription start site region 27210	1623 bp upstream
Tssr27211	transcription start site region 27211	1501 bp upstream
Tssr27212	transcription start site region 27212	118 bp upstream
Tssr27213	transcription start site region 27213	598 bp downstream