rs8273787 SNP Detail

Summary

• ID
  rs8273787
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157970740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  NAAAAACAGG GGTTTTTTTT TTTTTTTCNG TCATTTTCCA CAAATCCTAT CNCCATAGGA
  R
  ACCAGGAAAT CCTGAGCCCA CCTCTCTGGC CTCCCTTGGA GCAGTGTCAG TANCACCCTC
  TTTAGTGGGG ACGCTGAGCC CTTTGGCACC NCCAGGTCTC GTTGGCAAAC CTCTCTATTC
  CTCAGTTCTG GCTACGTTCC TGCCCTCAGG CCCTGCCTGG TCCAGGGCCC CTNTTTACCC
  ACCTGAACCC TNCNAACCCC AGCTCCCTGC TCCAGCCCTG GTCTATGGGA TTGGCTCAAT
  CCTTTCCCAC TGGGAAGCTG AGAGTAGTCC CAAAANCCAN CCANAACCCC AACTCACACT
  GCANACTCCC ACCTCCCTCC CAGTTCCTCC NGCCATCCCT TCTGNCTGTG GTGNGCTTCC
  CACCTCTCTG TCTCCACCCT GCTTTCTCCA NCCCANTTCC TCTGCCTGTT CCTGCTCANN
  AGTCGAGGCC CAGTTCAACC NNGGCTCTTT CNAAGAGGCT TCTGGTTTCC CCCCCCCCCC
  NGGCCNCCCT NGGGGCCCCC NCA                                        
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac
ss12771047	Tgm2_JC8148_2	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac
rs8273787					SNP	G	G	G	G	G	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157970740 () rs orientation: forward

Symbol	Name	Function Class
Rr568653	regulatory region 568653	1225 bp distal
Rr568654	regulatory region 568654	85 bp distal
Rr568655	regulatory region 568655	980 bp proximal
Rr568656	regulatory region 568656	1189 bp proximal
Tgm2	transglutaminase 2, C polypeptide	within coordinates
Tssr27210	transcription start site region 27210	1632 bp upstream
Tssr27211	transcription start site region 27211	1510 bp upstream
Tssr27212	transcription start site region 27212	127 bp upstream
Tssr27213	transcription start site region 27213	589 bp downstream