rs8273788 SNP Detail

Summary

• ID
  rs8273788
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157970913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

         NAA AAACAGGGGT TTTTTTTTTT TTTTCNGTCA TTTTCCACAA ATCCTATCNC
  CATAGGANAC CAGGAAATCC TGAGCCCACC TCTCTGGCCT CCCTTGGAGC AGTGTCAGTA
  NCACCCTCTT TAGTGGGGAC GCTGAGCCCT TTGGCACCNC CAGGTCTCGT TGGCAAACCT
  CTCTATTCCT CAGTTCTGGC TACGTTCCTG CCCTCAGGCC CTGCCTGGTC CAGGGCCCCT
  Y
  TTTACCCACC TGAACCCTNC NAACCCCAGC TCCCTGCTCC AGCCCTGGTC TATGGGATTG
  GCTCAATCCT TTCCCACTGG GAAGCTGAGA GTAGTCCCAA AANCCANCCA NAACCCCAAC
  TCACACTGCA NACTCCCACC TCCCTCCCAG TTCCTCCNGC CATCCCTTCT GNCTGTGGTG
  NGCTTCCCAC CTCTCTGTCT CCACCCTGCT TTCTCCANCC CANTTCCTCT GCCTGTTCCT
  GCTCANNAGT CGAGGCCCAG TTCAACCNNG GCTCTTTCNA AGAGGCTTCT GGTTTCCCCC
  CCCCCCCNGG CCNCCCTNGG GGCCCCCNCA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac
ss12771048	Tgm2_JC8148_3	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac
rs8273788					SNP	C	C	C	C	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157970913 () rs orientation: forward

Symbol	Name	Function Class
Rr568653	regulatory region 568653	1398 bp distal
Rr568654	regulatory region 568654	258 bp distal
Rr568655	regulatory region 568655	807 bp proximal
Rr568656	regulatory region 568656	1016 bp proximal
Tgm2	transglutaminase 2, C polypeptide	within coordinates
Tssr27210	transcription start site region 27210	1805 bp upstream
Tssr27211	transcription start site region 27211	1683 bp upstream
Tssr27212	transcription start site region 27212	300 bp upstream
Tssr27213	transcription start site region 27213	416 bp downstream