rs8273789 SNP Detail

Summary

• ID
  rs8273789
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157970932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATAGGAGA CCAGGAAATC
  CTGAGCCCAC CTCTCTGGCC TCCCTTGGAG CAGTGTCAGT AGCAGCCTCT TTAGTGGGGA
  CGCTGAGCCC TTTGGCACCT CCAGGTCTCG TTGGCTAACC TCTCTATTCC TCAGTTCTGG
  CTACGTTCCT GCCCTCAGGC CCTGCCTGGT CCAGGGCCCC TCTCTACCCA CCTGAACCCT
  S
  CCAACCCCAG CTCCCTGCTC CAGCCCTGGT CTATGGGATT GGCTCAATCC TTTCCCACTG
  GGAAGCTGAG AGTAGTCCCA AAAGCCAGCC AGAACCCCAA CTCACACTGC AGACTCCCAC
  CTCCCTCCCA GTTCCTCCTG CCATCCCTTC TGCCTGTGGT GAGCTTCCCA CCTCTCTGTC
  TCCACCCTGC TTTCTCCAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac
ss12771049	Tgm2_JC8148_4	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac
rs8273789					SNP	G	G	G	G	G	G	G	G	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157970932 () rs orientation: forward

Symbol	Name	Function Class
Rr568653	regulatory region 568653	1417 bp distal
Rr568654	regulatory region 568654	277 bp distal
Rr568655	regulatory region 568655	788 bp proximal
Rr568656	regulatory region 568656	997 bp proximal
Tgm2	transglutaminase 2, C polypeptide	within coordinates
Tssr27210	transcription start site region 27210	1824 bp upstream
Tssr27211	transcription start site region 27211	1702 bp upstream
Tssr27212	transcription start site region 27212	319 bp upstream
Tssr27213	transcription start site region 27213	397 bp downstream